Detailed information of SNP:
|
SNP ID:
sf1006545592(Gbrowse)
Chromosome: chr10 Position: 6545592 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 50.57% | 49.43% |
| All Indica | 799 | 84.48% | 15.52% |
| All Japonica | 489 | 1.64% | 98.36% |
| Aus | 58 | 6.90% | 93.10% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 329 | 0.91% | 99.09% |
| Tropical Japonica | 92 | 2.17% | 97.83% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006545592 | T->C | LOC_Os10g11794(LOC_Os10g11794.1) | INTRON |