Detailed information of SNP:
|
SNP ID:
sf1006549596(Gbrowse)
Chromosome: chr10 Position: 6549596 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 79.35% | 20.65% |
| All Indica | 799 | 85.23% | 14.77% |
| All Japonica | 497 | 83.50% | 16.50% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006549596 | G->A | INTERGENIC | None |