Detailed information of SNP:
|
SNP ID:
sf1006549888(Gbrowse)
Chromosome: chr10 Position: 6549888 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 80.75% | 19.25% |
| All Indica | 796 | 86.68% | 13.32% |
| All Japonica | 495 | 84.65% | 15.35% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 93 | 43.01% | 56.99% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006549888 | A->T | INTERGENIC | None |