Detailed information of SNP:
|
SNP ID:
sf1006556344(Gbrowse)
Chromosome: chr10 Position: 6556344 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1177 | 61.17% | 38.83% |
| All Indica | 570 | 22.28% | 77.72% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 345 | 5.80% | 94.20% |
| Indica II | 108 | 59.26% | 40.74% |
| Indica Intermediate | 117 | 36.75% | 63.25% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 31 | 74.19% | 25.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006556344 | G->A | INTERGENIC | None |