Detailed information of SNP:
|
SNP ID:
sf1006563612(Gbrowse)
Chromosome: chr10 Position: 6563612 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1332 | 85.21% | 14.79% |
| All Indica | 761 | 88.17% | 11.83% |
| All Japonica | 451 | 77.16% | 22.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 88.65% | 11.35% |
| Indica II | 200 | 85.00% | 15.00% |
| Indica Intermediate | 191 | 90.58% | 9.42% |
| Temperate Japonica | 312 | 75.32% | 24.68% |
| Tropical Japonica | 79 | 84.81% | 15.19% |
| Japonica Intermediate | 60 | 76.67% | 23.33% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006563612 | A->T | INTERGENIC | None |