Detailed information of SNP:



SNP ID: sf1006603323(Gbrowse)

Chromosome: chr10

Position: 6603323
Major allele: C

Minor allele: A

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1418 97.67% 2.33%
All Indica798 100.00% 0.00%
All Japonica497 93.56% 6.44%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate210 100.00% 0.00%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica94 74.47% 25.53%
Japonica Intermediate68 92.65% 7.35%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1006603323 C->A LOC_Os10g11870(LOC_Os10g11870.1) Non-Synonymous SNP