Detailed information of SNP:
|
SNP ID:
sf1006605975(Gbrowse)
Chromosome: chr10 Position: 6605975 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 65.21% | 34.79% |
| All Indica | 774 | 85.79% | 14.21% |
| All Japonica | 459 | 23.53% | 76.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 79.05% | 20.95% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 206 | 86.89% | 13.11% |
| Temperate Japonica | 302 | 7.62% | 92.38% |
| Tropical Japonica | 91 | 72.53% | 27.47% |
| Japonica Intermediate | 66 | 28.79% | 71.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006605975 | T->A | INTERGENIC | None |