Detailed information of SNP:
|
SNP ID:
sf1006611847(Gbrowse)
Chromosome: chr10 Position: 6611847 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 51.36% | 48.64% |
| All Indica | 783 | 75.10% | 24.90% |
| All Japonica | 495 | 12.12% | 87.88% |
| Aus | 62 | 56.45% | 43.55% |
| Indica I | 367 | 60.76% | 39.24% |
| Indica II | 210 | 87.14% | 12.86% |
| Indica Intermediate | 206 | 88.35% | 11.65% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 92 | 48.91% | 51.09% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006611847 | C->T | INTERGENIC | None |