Detailed information of SNP:
|
SNP ID:
sf1006612649(Gbrowse)
Chromosome: chr10 Position: 6612649 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 78.21% | 21.79% |
| All Indica | 790 | 65.70% | 34.30% |
| All Japonica | 494 | 96.76% | 3.24% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 371 | 85.44% | 14.56% |
| Indica II | 210 | 45.71% | 54.29% |
| Indica Intermediate | 209 | 50.72% | 49.28% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 85.87% | 14.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006612649 | C->T | INTERGENIC | None |