Detailed information of SNP:
|
SNP ID:
sf1006616816(Gbrowse)
Chromosome: chr10 Position: 6616816 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 72.42% | 27.58% |
| All Indica | 778 | 55.14% | 44.86% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 362 | 76.80% | 23.20% |
| Indica II | 209 | 29.67% | 70.33% |
| Indica Intermediate | 207 | 43.00% | 57.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006616816 | T->C | INTERGENIC | None |