Detailed information of SNP:
|
SNP ID:
sf1006617386(Gbrowse)
Chromosome: chr10 Position: 6617386 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 62.73% | 37.27% |
| All Indica | 773 | 50.19% | 49.81% |
| All Japonica | 495 | 78.99% | 21.01% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 363 | 69.70% | 30.30% |
| Indica II | 205 | 27.32% | 72.68% |
| Indica Intermediate | 205 | 38.54% | 61.46% |
| Temperate Japonica | 335 | 74.93% | 25.07% |
| Tropical Japonica | 92 | 83.70% | 16.30% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006617386 | T->C | INTERGENIC | None |