Detailed information of SNP:
|
SNP ID:
sf1006618083(Gbrowse)
Chromosome: chr10 Position: 6618083 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 77.82% | 22.18% |
| All Indica | 798 | 64.04% | 35.96% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 374 | 86.63% | 13.37% |
| Indica II | 213 | 37.56% | 62.44% |
| Indica Intermediate | 211 | 50.71% | 49.29% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006618083 | T->C | INTERGENIC | None |