Detailed information of SNP:
|
SNP ID:
sf1006628676(Gbrowse)
Chromosome: chr10 Position: 6628676 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1366 | 71.96% | 28.04% |
| All Indica | 754 | 55.17% | 44.83% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 62 | 91.94% | 8.06% |
| Indica I | 354 | 72.88% | 27.12% |
| Indica II | 199 | 35.68% | 64.32% |
| Indica Intermediate | 201 | 43.28% | 56.72% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006628676 | T->C | LOC_Os10g11920(LOC_Os10g11920.1) | INTRON |