Detailed information of SNP:
|
SNP ID:
sf1006629120(Gbrowse)
Chromosome: chr10 Position: 6629120 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 94.37% | 5.63% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 448 | 83.48% | 16.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 295 | 74.92% | 25.08% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006629120 | C->T | LOC_Os10g11920(LOC_Os10g11920.1) | Synonymous |