Detailed information of SNP:
|
SNP ID:
sf1006630596(Gbrowse)
Chromosome: chr10 Position: 6630596 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 66.89% | 33.11% |
| All Indica | 754 | 53.05% | 46.95% |
| All Japonica | 485 | 93.61% | 6.39% |
| Aus | 63 | 20.63% | 79.37% |
| Indica I | 342 | 37.43% | 62.57% |
| Indica II | 206 | 68.93% | 31.07% |
| Indica Intermediate | 206 | 63.11% | 36.89% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 86 | 73.26% | 26.74% |
| Japonica Intermediate | 64 | 90.62% | 9.38% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006630596 | G->A | LOC_Os10g11920(LOC_Os10g11920.1) | Synonymous |