Detailed information of SNP:
|
SNP ID:
sf1006631597(Gbrowse)
Chromosome: chr10 Position: 6631597 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 59.23% | 40.77% |
| All Indica | 766 | 86.81% | 13.19% |
| All Japonica | 491 | 12.02% | 87.98% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 354 | 84.46% | 15.54% |
| Indica II | 205 | 90.24% | 9.76% |
| Indica Intermediate | 207 | 87.44% | 12.56% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 90 | 50.00% | 50.00% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006631597 | C->T | LOC_Os10g11920(LOC_Os10g11920.1) | Synonymous |