Detailed information of SNP:
|
SNP ID:
sf1006633085(Gbrowse)
Chromosome: chr10 Position: 6633085 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 81.33% | 18.67% |
| All Indica | 796 | 68.97% | 31.03% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 210 | 48.10% | 51.90% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006633085 | G->C | LOC_Os10g11930(LOC_Os10g11930.1) | Non-Synonymous SNP |