Detailed information of SNP:
|
SNP ID:
sf1006633118(Gbrowse)
Chromosome: chr10 Position: 6633118 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 78.77% | 21.23% |
| All Indica | 798 | 68.30% | 31.70% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 88.24% | 11.76% |
| Indica II | 213 | 50.23% | 49.77% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 90.75% | 9.25% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006633118 | G->A | LOC_Os10g11930(LOC_Os10g11930.1) | Non-Synonymous SNP |