Detailed information of SNP:
|
SNP ID:
sf1006635441(Gbrowse)
Chromosome: chr10 Position: 6635441 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1300 | 55.77% | 44.23% |
| All Indica | 714 | 84.87% | 15.13% |
| All Japonica | 473 | 6.34% | 93.66% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 322 | 76.71% | 23.29% |
| Indica II | 202 | 90.59% | 9.41% |
| Indica Intermediate | 190 | 92.63% | 7.37% |
| Temperate Japonica | 333 | 1.20% | 98.80% |
| Tropical Japonica | 75 | 26.67% | 73.33% |
| Japonica Intermediate | 65 | 9.23% | 90.77% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006635441 | A->G | INTERGENIC | None |