Detailed information of SNP:
|
SNP ID:
sf1006643681(Gbrowse)
Chromosome: chr10 Position: 6643681 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1367 | 91.88% | 8.12% |
| All Indica | 752 | 96.68% | 3.32% |
| All Japonica | 493 | 82.96% | 17.04% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 345 | 96.52% | 3.48% |
| Indica II | 206 | 97.57% | 2.43% |
| Indica Intermediate | 201 | 96.02% | 3.98% |
| Temperate Japonica | 334 | 75.15% | 24.85% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006643681 | A->G | LOC_Os10g11954(LOC_Os10g11954.1) | Non-Synonymous SNP |