Detailed information of SNP:
|
SNP ID:
sf1006663401(Gbrowse)
Chromosome: chr10 Position: 6663401 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 71.50% | 28.50% |
| All Indica | 797 | 59.22% | 40.78% |
| All Japonica | 494 | 88.66% | 11.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 26.76% | 73.24% |
| Indica Intermediate | 209 | 36.84% | 63.16% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 92 | 57.61% | 42.39% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006663401 | C->T | INTERGENIC | None |