Detailed information of SNP:
|
SNP ID:
sf1006665041(Gbrowse)
Chromosome: chr10 Position: 6665041 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.92% | 46.08% |
| All Indica | 799 | 41.93% | 58.07% |
| All Japonica | 495 | 81.82% | 18.18% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 10.67% | 89.33% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 92 | 27.17% | 72.83% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006665041 | A->G | INTERGENIC | None |