Detailed information of SNP:
SNP ID:
sf1006702960(Gbrowse)
Chromosome: chr10 Position: 6702960 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1152 | 73.26% | 26.74% |
All Indica | 548 | 44.89% | 55.11% |
All Japonica | 493 | 99.59% | 0.41% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 305 | 34.75% | 65.25% |
Indica II | 118 | 61.86% | 38.14% |
Indica Intermediate | 125 | 53.60% | 46.40% |
Temperate Japonica | 334 | 100.00% | 0.00% |
Tropical Japonica | 94 | 97.87% | 2.13% |
Japonica Intermediate | 65 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 30 | 86.67% | 13.33% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1006702960 | G->A | INTERGENIC | None |