Detailed information of SNP:
|
SNP ID:
sf1006702960(Gbrowse)
Chromosome: chr10 Position: 6702960 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1152 | 73.26% | 26.74% |
| All Indica | 548 | 44.89% | 55.11% |
| All Japonica | 493 | 99.59% | 0.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 305 | 34.75% | 65.25% |
| Indica II | 118 | 61.86% | 38.14% |
| Indica Intermediate | 125 | 53.60% | 46.40% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 30 | 86.67% | 13.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006702960 | G->A | INTERGENIC | None |