Detailed information of SNP:
|
SNP ID:
sf1006714440(Gbrowse)
Chromosome: chr10 Position: 6714440 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1343 | 51.53% | 48.47% |
| All Indica | 755 | 35.10% | 64.90% |
| All Japonica | 478 | 79.29% | 20.71% |
| Aus | 56 | 42.86% | 57.14% |
| Indica I | 350 | 12.57% | 87.43% |
| Indica II | 206 | 57.28% | 42.72% |
| Indica Intermediate | 199 | 51.76% | 48.24% |
| Temperate Japonica | 332 | 96.99% | 3.01% |
| Tropical Japonica | 82 | 13.41% | 86.59% |
| Japonica Intermediate | 64 | 71.88% | 28.12% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006714440 | A->C | LOC_Os10g12050(LOC_Os10g12050.2) | UTR_5_PRIME |
| sf1006714440 | A->C | LOC_Os10g12050(LOC_Os10g12050.1) | UTR_5_PRIME |