Detailed information of SNP:
|
SNP ID:
sf1006730984(Gbrowse)
Chromosome: chr10 Position: 6730984 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.61% | 47.39% |
| All Indica | 799 | 69.59% | 30.41% |
| All Japonica | 497 | 17.51% | 82.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 46.95% | 53.05% |
| Indica Intermediate | 211 | 53.55% | 46.45% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006730984 | C->T | INTERGENIC | None |