Detailed information of SNP:
|
SNP ID:
sf1006731381(Gbrowse)
Chromosome: chr10 Position: 6731381 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 52.72% | 47.28% |
| All Indica | 798 | 69.55% | 30.45% |
| All Japonica | 497 | 17.51% | 82.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 46.95% | 53.05% |
| Indica Intermediate | 210 | 53.33% | 46.67% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006731381 | A->G | LOC_Os10g12080(LOC_Os10g12080.1) | Synonymous |