Detailed information of SNP:
|
SNP ID:
sf1006741300(Gbrowse)
Chromosome: chr10 Position: 6741300 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 69.94% | 30.06% |
| All Indica | 799 | 58.57% | 41.43% |
| All Japonica | 496 | 83.47% | 16.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 24.41% | 75.59% |
| Indica Intermediate | 211 | 36.49% | 63.51% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 93 | 47.31% | 52.69% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006741300 | A->G | LOC_Os10g12110(LOC_Os10g12110.1) | INTRON |