Detailed information of SNP:
|
SNP ID:
sf1006742400(Gbrowse)
Chromosome: chr10 Position: 6742400 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 72.74% | 27.26% |
| All Indica | 798 | 62.78% | 37.22% |
| All Japonica | 495 | 84.85% | 15.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 210 | 41.43% | 58.57% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 93 | 50.54% | 49.46% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006742400 | C->T | LOC_Os10g12110(LOC_Os10g12110.1) | INTRON |