Detailed information of SNP:
|
SNP ID:
sf1006753811(Gbrowse)
Chromosome: chr10 Position: 6753811 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 69.11% | 30.89% |
| All Indica | 799 | 57.82% | 42.18% |
| All Japonica | 496 | 82.86% | 17.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 22.07% | 77.93% |
| Indica Intermediate | 211 | 36.49% | 63.51% |
| Temperate Japonica | 334 | 96.41% | 3.59% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006753811 | G->A | LOC_Os10g12130(LOC_Os10g12130.1) | INTRON |