Detailed information of SNP:
|
SNP ID:
sf1006773011(Gbrowse)
Chromosome: chr10 Position: 6773011 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1328 | 54.07% | 45.93% |
| All Indica | 736 | 78.53% | 21.47% |
| All Japonica | 487 | 17.45% | 82.55% |
| Aus | 51 | 31.37% | 68.63% |
| Indica I | 363 | 89.53% | 10.47% |
| Indica II | 186 | 69.35% | 30.65% |
| Indica Intermediate | 187 | 66.31% | 33.69% |
| Temperate Japonica | 332 | 2.41% | 97.59% |
| Tropical Japonica | 90 | 71.11% | 28.89% |
| Japonica Intermediate | 65 | 20.00% | 80.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006773011 | C->T | INTERGENIC | None |