Detailed information of SNP:
|
SNP ID:
sf1006814947(Gbrowse)
Chromosome: chr10 Position: 6814947 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 62.54% | 37.46% |
| All Indica | 799 | 56.32% | 43.68% |
| All Japonica | 496 | 83.47% | 16.53% |
| Aus | 66 | 0.00% | 100.00% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 21.13% | 78.87% |
| Indica Intermediate | 211 | 36.97% | 63.03% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 38.71% | 61.29% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006814947 | G->A | INTERGENIC | None |