Detailed information of SNP:
|
SNP ID:
sf1006855250(Gbrowse)
Chromosome: chr10 Position: 6855250 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1237 | 71.87% | 28.13% |
| All Indica | 626 | 72.36% | 27.64% |
| All Japonica | 495 | 83.84% | 16.16% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 355 | 92.39% | 7.61% |
| Indica II | 129 | 35.66% | 64.34% |
| Indica Intermediate | 142 | 55.63% | 44.37% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 39.78% | 60.22% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 35 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006855250 | T->C | LOC_Os10g12290(LOC_Os10g12290.1) | INTRON |