Detailed information of SNP:
|
SNP ID:
sf1006861841(Gbrowse)
Chromosome: chr10 Position: 6861841 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 90.68% | 9.32% |
| All Indica | 788 | 89.34% | 10.66% |
| All Japonica | 494 | 92.51% | 7.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 207 | 77.78% | 22.22% |
| Indica Intermediate | 206 | 84.95% | 15.05% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 80.43% | 19.57% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006861841 | C->T | LOC_Os10g12300(LOC_Os10g12300.1) | Non-Synonymous SNP |