Detailed information of SNP:
|
SNP ID:
sf1006867529(Gbrowse)
Chromosome: chr10 Position: 6867529 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1322 | 59.08% | 40.92% |
| All Indica | 776 | 44.46% | 55.54% |
| All Japonica | 468 | 83.33% | 16.67% |
| Aus | 25 | 12.00% | 88.00% |
| Indica I | 360 | 11.39% | 88.61% |
| Indica II | 212 | 80.19% | 19.81% |
| Indica Intermediate | 204 | 65.69% | 34.31% |
| Temperate Japonica | 331 | 82.48% | 17.52% |
| Tropical Japonica | 75 | 84.00% | 16.00% |
| Japonica Intermediate | 62 | 87.10% | 12.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006867529 | A->G | INTERGENIC | None |