Detailed information of SNP:
|
SNP ID:
sf1006915117(Gbrowse)
Chromosome: chr10 Position: 6915117 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.03% | 46.97% |
| All Indica | 798 | 56.77% | 43.23% |
| All Japonica | 497 | 56.14% | 43.86% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 22.54% | 77.46% |
| Indica Intermediate | 210 | 37.14% | 62.86% |
| Temperate Japonica | 335 | 59.10% | 40.90% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006915117 | T->C | INTERGENIC | None |