Detailed information of SNP:
|
SNP ID:
sf1006930007(Gbrowse)
Chromosome: chr10 Position: 6930007 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 89.41% | 10.59% |
| All Indica | 797 | 87.70% | 12.30% |
| All Japonica | 444 | 90.32% | 9.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 287 | 96.86% | 3.14% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 63 | 77.78% | 22.22% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006930007 | C->A | INTERGENIC | None |