Detailed information of SNP:
|
SNP ID:
sf1006953849(Gbrowse)
Chromosome: chr10 Position: 6953849 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 86.94% | 13.06% |
| All Indica | 797 | 83.69% | 16.31% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006953849 | C->G | LOC_Os10g12480(LOC_Os10g12480.1) | INTRON |