Detailed information of SNP:
|
SNP ID:
sf1006992046(Gbrowse)
Chromosome: chr10 Position: 6992046 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 73.54% | 26.46% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 497 | 28.97% | 71.03% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 18.21% | 81.79% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006992046 | G->A | INTERGENIC | None |