Detailed information of SNP:



SNP ID: sf1006996284(Gbrowse)

Chromosome: chr10

Position: 6996284
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1415 80.57% 19.43%
All Indica799 98.12% 1.88%
All Japonica494 51.42% 48.58%
Aus67 86.57% 13.43%
Indica I375 98.13% 1.87%
Indica II213 98.59% 1.41%
Indica Intermediate211 97.63% 2.37%
Temperate Japonica333 51.35% 48.65%
Tropical Japonica93 61.29% 38.71%
Japonica Intermediate68 38.24% 61.76%
Group VI/Aromatic14 85.71% 14.29%
Intermediate41 78.05% 21.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1006996284 A->G LOC_Os10g12548(LOC_Os10g12548.1) INTRON