Detailed information of SNP:
|
SNP ID:
sf1006996284(Gbrowse)
Chromosome: chr10 Position: 6996284 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 80.57% | 19.43% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 494 | 51.42% | 48.58% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 333 | 51.35% | 48.65% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1006996284 | A->G | LOC_Os10g12548(LOC_Os10g12548.1) | INTRON |