Detailed information of SNP:
|
SNP ID:
sf1007019471(Gbrowse)
Chromosome: chr10 Position: 7019471 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 65.35% | 34.65% |
| All Indica | 780 | 94.36% | 5.64% |
| All Japonica | 497 | 16.90% | 83.10% |
| Aus | 60 | 88.33% | 11.67% |
| Indica I | 368 | 95.65% | 4.35% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 201 | 91.04% | 8.96% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007019471 | G->A | LOC_Os10g12570(LOC_Os10g12570.1) | INTRON |