Detailed information of SNP:
|
SNP ID:
sf1007063269(Gbrowse)
Chromosome: chr10 Position: 7063269 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 97.99% | 2.01% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 474 | 95.57% | 4.43% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 98.14% | 1.86% |
| Tropical Japonica | 89 | 88.76% | 11.24% |
| Japonica Intermediate | 63 | 92.06% | 7.94% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007063269 | T->C | INTERGENIC | None |