Detailed information of SNP:
|
SNP ID:
sf1007117435(Gbrowse)
Chromosome: chr10 Position: 7117435 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 97.14% | 2.86% |
| All Indica | 796 | 99.25% | 0.75% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 52 | 42.31% | 57.69% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007117435 | G->C | INTERGENIC | None |