Detailed information of SNP:
|
SNP ID:
sf1007133860(Gbrowse)
Chromosome: chr10 Position: 7133860 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.68% | 44.32% |
| All Indica | 798 | 55.51% | 44.49% |
| All Japonica | 497 | 66.20% | 33.80% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 212 | 21.23% | 78.77% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 335 | 71.64% | 28.36% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007133860 | A->G | INTERGENIC | None |