Detailed information of SNP:
|
SNP ID:
sf1007205825(Gbrowse)
Chromosome: chr10 Position: 7205825 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 68.75% | 31.25% |
| All Indica | 780 | 88.08% | 11.92% |
| All Japonica | 478 | 32.43% | 67.57% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 365 | 83.84% | 16.16% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 204 | 89.22% | 10.78% |
| Temperate Japonica | 317 | 14.20% | 85.80% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007205825 | A->G | INTERGENIC | None |