Detailed information of SNP:
|
SNP ID:
sf1007286380(Gbrowse)
Chromosome: chr10 Position: 7286380 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 94.78% | 5.22% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 458 | 84.93% | 15.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 305 | 78.69% | 21.31% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 93.33% | 6.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007286380 | C->T | INTERGENIC | None |