Detailed information of SNP:
|
SNP ID:
sf1007397207(Gbrowse)
Chromosome: chr10 Position: 7397207 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 87.70% | 12.30% |
| All Indica | 795 | 88.93% | 11.07% |
| All Japonica | 490 | 86.33% | 13.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 210 | 77.62% | 22.38% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 89 | 46.07% | 53.93% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007397207 | G->T | LOC_Os10g13610(LOC_Os10g13610.1) | Non-Synonymous SNP |