Detailed information of SNP:
|
SNP ID:
sf1007436336(Gbrowse)
Chromosome: chr10 Position: 7436336 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 79.92% | 20.08% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007436336 | A->G | INTERGENIC | None |