Detailed information of SNP:
|
SNP ID:
sf1007443254(Gbrowse)
Chromosome: chr10 Position: 7443254 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 80.75% | 19.25% |
| All Indica | 798 | 86.72% | 13.28% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007443254 | G->A | INTERGENIC | None |