Detailed information of SNP:
|
SNP ID:
sf1007451528(Gbrowse)
Chromosome: chr10 Position: 7451528 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 80.13% | 19.87% |
| All Indica | 799 | 85.61% | 14.39% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007451528 | T->G | LOC_Os10g13694(LOC_Os10g13694.1) | UTR_5_PRIME |