Detailed information of SNP:
|
SNP ID:
sf1007452255(Gbrowse)
Chromosome: chr10 Position: 7452255 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 87.11% | 12.89% |
| All Indica | 795 | 87.92% | 12.08% |
| All Japonica | 495 | 85.45% | 14.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 212 | 75.00% | 25.00% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 92 | 45.65% | 54.35% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007452255 | A->G | LOC_Os10g13694(LOC_Os10g13694.1) | UTR_5_PRIME |